Basic Information
VIS ID
TVIS30003795
Fusion event
HIV-chr6 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr6
Cytoband
p23
Reference genome
GRCh37/hg19
Start
13980857/13980626 (Hg38)
End
13980857/13980626 (Hg38)
Orient
-
Location type
Intergenic
Fragile sites / regions
FRA6A
Nearest miRNA
hsa-mir-3691/Upstream/3540832; hsa-mir-10398/Downstream/2160930;
Nearest TSS
ENST00000381078/Upstream/55433; ENST00000427011/Downstream/24294;
Nearest CpG islands
None/Target, chr6-CpG: 120/Upstream/55347, chr6-CpG: 73/Downstream/136759
Nearby gene
RNF182(No orient, 617)
Upstream sequence
AATAATGGTTTCATTCACTTCTGAAATGTTTATGTAAATGAGCAAAGAATCAGCTTAAAGAAAGCAGTTACCTGTATTGGTCATAACTTACAGGGTGAAC
Downstream sequence
TCATGCATATCTGCCGAGAGACTTGAAAGTGATATGTATTTGCCAGATTGTAAACAGATACTAGGCTTCGAAGACACCTTGAAGAAATGTCTTAGTATGT
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
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