Basic Information
VIS ID
TVIS30003802
Fusion event
HIV-chr6 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr6
Cytoband
p22.3
Reference genome
GRCh37/hg19
Start
18306040/18305809 (Hg38)
End
18306040/18305809 (Hg38)
Orient
-
Location type
Intergenic
Nearest miRNA
hsa-mir-3691/Upstream/2164185; hsa-mir-10398/Downstream/265975;
Nearest TSS
ENST00000381078/Upstream/40986; ENST00000486622/Downstream/81541;
Nearest CpG islands
None/Target, chr6-CpG: 120/Upstream/27978, chr6-CpG: 34/Downstream/81410
Nearby gene
DEK(No orient, 41241)
Nearest cancer related gene
DEK(OG, No orient, 41241)
Upstream sequence
cctcggtctcccaaagtgctgggattacaggcatgagccactgtgcccggccTATAAAATTTAATTTTTAAGAAAGCAGAGGTGTGACGTTTTGACTGGT
Downstream sequence
GTTACTTATTTTGCATTCCtttttttattcttgtttttttcttttgagatggatggagtctcgctcttgttacccaggctggagtgcaatggtgcaatct
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
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