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TVIS30003806
Basic Information
VIS ID
TVIS30003806
Fusion event
HIV-RIPOR2 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr6
Cytoband
p22.3
Reference genome
GRCh37/hg19
Start
24867046/24866818 (Hg38)
End
24867046/24866818 (Hg38)
Orient
+
Location type
Intronic
Target gene
RIPOR2
miRNAs that regulate target gene
hsa-mir-124-3p
;
hsa-mir-374a-5p
;
hsa-mir-4674
;
hsa-mir-4314
;
hsa-mir-6749-3p
;
hsa-mir-1260b
;
hsa-mir-1260a
;
hsa-mir-4437
;
hsa-mir-6778-3p
;
hsa-mir-378g
;
hsa-mir-4486
;
hsa-mir-6860
;
hsa-mir-612
;
hsa-mir-5189-5p
;
hsa-mir-3187-5p
;
hsa-mir-1285-3p
;
hsa-mir-532-3p
;
hsa-mir-1224-3p
;
hsa-mir-6877-3p
;
hsa-mir-6819-3p
Nearest miRNA
hsa-mir-3691/Upstream/6294938; hsa-mir-10398/Downstream/2280808;
Nearest TSS
ENST00000381078/Upstream/23682;
ENST00000428903/Downstream/10537;
Nearest CpG islands
None/Target,
chr6-CpG: 120/Upstream/91317
,
chr6-CpG: 82/Downstream/43580
Upstream sequence
GACTGCAGTTAACTACAAGAATTTTCAGGCGGATAACAAACAACAATACCATCAGGCATTGTCAAAAGCAAATAAAACCTGTTGCTTTGGGGAGGCATAC
Downstream sequence
TTACCTAGCACTATTTGAATTTTCATTTCAGTATGAACTTTGTTTCTTCAAAAAGGAAGCTTAACTATAGATCCAGAAGAAGGTGGAGATGCATATACTA
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
Sample Information
×
Sample name
Active CD4+
Sample type
Cell line
Gender
Female
CpG Island Information
×
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