Basic Information
VIS ID
TVIS30003807
Fusion event
HIV-RIPOR2 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr6
Cytoband
p22.3
Reference genome
GRCh37/hg19
Start
24867553/24867325 (Hg38)
End
24867553/24867325 (Hg38)
Orient
+
Location type
Intronic
Target gene
RIPOR2
miRNAs that regulate target gene
hsa-mir-124-3p ; hsa-mir-374a-5p ; hsa-mir-4674 ; hsa-mir-4314 ; hsa-mir-6749-3p ; hsa-mir-1260b ; hsa-mir-1260a ; hsa-mir-4437 ; hsa-mir-6778-3p ; hsa-mir-378g ; hsa-mir-4486 ; hsa-mir-6860 ; hsa-mir-612 ; hsa-mir-5189-5p ; hsa-mir-3187-5p ; hsa-mir-1285-3p ; hsa-mir-532-3p ; hsa-mir-1224-3p ; hsa-mir-6877-3p ; hsa-mir-6819-3p
Nearest miRNA
hsa-mir-3691/Upstream/6295445; hsa-mir-10398/Downstream/2280301;
Nearest TSS
ENST00000381078/Upstream/24189; ENST00000428903/Downstream/10030;
Nearest CpG islands
None/Target, chr6-CpG: 120/Upstream/91824, chr6-CpG: 82/Downstream/43073
Upstream sequence
AAGACTCAAGGAGTGTCCTATCTGCTGATGACATCTTTTGGTTGATGGTTGGCATagagtgtggtttccgtgctttaaagctaagcctcatctggtgagc
Downstream sequence
ttggtaaaatgctgatgcccaggccccactctgagatgctgattcagtaggttagggctgggccaggaatctgaaattttaaataaacattgcaaattgt
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
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