Basic Information
VIS ID
TVIS30003811
Fusion event
HIV-CMAHP integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr6
Cytoband
p22.3
Reference genome
GRCh37/hg19
Start
25111159/25110931 (Hg38)
End
25111159/25110931 (Hg38)
Orient
+
Location type
ncRNA_intronic
Target gene
CMAHP
Nearest miRNA
hsa-mir-3691/Upstream/6539051; hsa-mir-10398/Downstream/2036695;
Nearest TSS
ENST00000381078/Upstream/53858; ENST00000461945/Downstream/168147;
Nearest CpG islands
None/Target, chr6-CpG: 120/Upstream/199573, chr6-CpG: 36/Downstream/28761
Upstream sequence
TATACCACTGTAGGGTGTGGTAGAAAGTTGAATAAACAAACAAATGattacacatctattatatttcaaacttggtgctggggcagttttacatactatg
Downstream sequence
ttagtcaattcttatcaaaaagctatgaattttttgtttttgtagatgaggaaacattcagaaatatacaacacacagtaaactggtattcaaatttggg
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
Curate