Basic Information
VIS ID
TVIS30003812
Fusion event
HIV-chr6 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr6
Cytoband
p22.2
Reference genome
GRCh37/hg19
Start
26138635/26138407 (Hg38)
End
26138635/26138407 (Hg38)
Orient
+
Location type
Intergenic
Fragile sites / regions
FRA6C
Nearest miRNA
hsa-mir-3691/Upstream/7566527; hsa-mir-10398/Downstream/1009219;
Nearest TSS
ENST00000381078/Upstream/14204; ENST00000304218/Downstream/17947;
Nearest CpG islands
None/Target, chr6-CpG: 120/Upstream/13853, chr6-CpG: 56/Downstream/17814
Nearby gene
HIST1H2AC(No orient, 13717)
Upstream sequence
TACATTCACAGGGTTCAAACTATTTGAAGTAAAGAGATTATATATAAAGAATCCATCCCTCAACTTACCCAGGTGGTCACTTTTCTTTTTCTTGTGTATC
Downstream sequence
TGCCCAGTATTCATTCCTGCTGATATCAGTCAATaatgaatgatacgtgttttcttcacttttttcattcttgtcaggtagcagactgtgtagacttttc
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
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