VISDB Viral Integration Site DataBase

VIS ID

TVIS30003813

Fusion event

HIV-HIST1H2BD integration

Validated

No

Detection method

QiaQuick PCR and Sequencing

Data source

download(RID)

Sample type

Disease

HIV-infected disease (HID)

Quality evaluation

Normal

Reported year

2013

PubMed ID

Virus name

HIV

Reference genome

Not given

Chromosome

chr6

Cytoband

p22.2

Reference genome

Start

End

26168456/26168228 (Hg38)

Orient

+

Location type

Intronic

Fragile sites / regions

Target gene

miRNAs that regulate target gene

hsa-mir-98-5p ; hsa-mir-744-5p ; hsa-mir-455-3p ; hsa-mir-296-3p ; hsa-mir-652-3p ; hsa-mir-615-3p ; hsa-mir-378a-3p ; hsa-mir-3140-3p ; hsa-mir-2054 ; hsa-mir-6780a-5p ; hsa-mir-6779-5p ; hsa-mir-3689c ; hsa-mir-3689b-3p ; hsa-mir-3689a-3p ; hsa-mir-30b-3p ; hsa-mir-1273h-5p ; hsa-mir-4451 ; hsa-mir-6799-5p ; hsa-mir-6883-5p ; hsa-mir-6785-5p ; hsa-mir-4728-5p ; hsa-mir-149-3p ; hsa-mir-7106-5p ; hsa-mir-6086 ; hsa-mir-377-5p ; hsa-mir-4458 ; hsa-mir-4500 ; hsa-let-7i-5p ; hsa-let-7g-5p ; hsa-let-7f-5p ; hsa-let-7e-5p ; hsa-let-7d-5p ; hsa-let-7c-5p ; hsa-let-7b-5p ; hsa-let-7a-5p ; hsa-mir-27b-5p ; hsa-mir-3192-5p ; hsa-mir-556-5p ; hsa-mir-6831-5p ; hsa-mir-3927-3p ; hsa-mir-7851-3p ; hsa-mir-490-3p ; hsa-mir-6805-3p ; hsa-mir-5691 ; hsa-mir-676-5p ; hsa-mir-4264 ; hsa-mir-4797-3p ; hsa-mir-622 ; hsa-mir-4698 ; hsa-mir-8063 ; hsa-mir-4282 ; hsa-mir-3978 ; hsa-mir-8078 ; hsa-mir-3935 ; hsa-mir-1287-5p ; hsa-mir-3135b ; hsa-mir-875-3p ; hsa-mir-196b-5p ; hsa-mir-196a-5p ; hsa-mir-576-3p ; hsa-mir-4796-3p ; hsa-mir-93-5p ; hsa-mir-526b-3p ; hsa-mir-519d-3p ; hsa-mir-20b-5p ; hsa-mir-20a-5p ; hsa-mir-17-5p ; hsa-mir-106b-5p ; hsa-mir-106a-5p ; hsa-mir-548ah-5p ; hsa-mir-3609 ; hsa-mir-559 ; hsa-mir-548y ; hsa-mir-548w ; hsa-mir-548o-5p ; hsa-mir-548j-5p ; hsa-mir-548i ; hsa-mir-548h-5p ; hsa-mir-548d-5p ; hsa-mir-548c-5p ; hsa-mir-548bb-5p ; hsa-mir-548b-5p ; hsa-mir-548ay-5p ; hsa-mir-548au-5p ; hsa-mir-548as-5p ; hsa-mir-548ar-5p ; hsa-mir-548aq-5p ; hsa-mir-548ap-5p ; hsa-mir-548am-5p ; hsa-mir-548ak ; hsa-mir-548ae-5p ; hsa-mir-548ad-5p ; hsa-mir-548ab ; hsa-mir-548a-5p ; hsa-mir-8067 ; hsa-mir-6508-5p ; hsa-mir-670-3p ; hsa-mir-6894-3p ; hsa-mir-6794-3p ; hsa-mir-7162-5p ; hsa-mir-516b-3p ; hsa-mir-516a-3p ; hsa-mir-2115-5p ; hsa-mir-4763-5p ; hsa-mir-627-3p ; hsa-mir-1306-3p ; hsa-mir-4639-3p ; hsa-mir-6780a-3p ; hsa-mir-6852-3p ; hsa-mir-3909 ; hsa-mir-1292-3p ; hsa-mir-6850-3p

Nearest miRNA

hsa-mir-3691/Upstream/7596348; hsa-mir-10398/Downstream/979398;

Nearest TSS

Nearest CpG islands

None/Target, chr6-CpG: 120/Upstream/11310, chr6-CpG: 44/Downstream/3577

Upstream sequence

CTTTCCTTTTCAATACCAAAAAAAAAAGTGTATAAAAATAAAAACTTGggccaggcccagtggctcaagcctgtaataccagcactttgggaggccaagg

Downstream sequence

cgggcagatcacctgaggtcgggagttcaagaccagcctggccaacatggagaaaccccgtctctactaaaaatacaaaattagccaggcatggtggcac