Basic Information
VIS ID
TVIS30003814
Fusion event
HIV-chr6 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr6
Cytoband
p22.2
Reference genome
GRCh37/hg19
Start
26228139/26227911 (Hg38)
End
26228139/26227911 (Hg38)
Orient
-
Location type
Intergenic
Fragile sites / regions
FRA6C
Nearest miRNA
hsa-mir-3691/Upstream/7656031; hsa-mir-10398/Downstream/919715;
Nearest TSS
ENST00000381078/Upstream/2756; ENST00000244537/Downstream/7022;
Nearest CpG islands
None/Target, chr6-CpG: 120/Upstream/2349, chr6-CpG: 28/Downstream/12558
Nearby gene
HIST1H3E(No orient, 2295)
Upstream sequence
TAAATTTTTCATACACAATAAAATAAATGGATGTTTTAAAATTTACAGGGTCTTAggccaggcagggtggctcatgcctgtaatcccagcactttgggag
Downstream sequence
gccaagccaggcagatcacctaaaatcaggagttcaagaccagcttggccaatatggataaaccccgtctctactaaaaaaatacaaaaattagccgggc
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
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