Basic Information
VIS ID
TVIS30003815
Fusion event
HIV-chr6 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr6
Cytoband
p22.2
Reference genome
GRCh37/hg19
Start
26228626/26228398 (Hg38)
End
26228626/26228398 (Hg38)
Orient
+
Location type
Intergenic
Fragile sites / regions
FRA6C
Nearest miRNA
hsa-mir-3691/Upstream/7656518; hsa-mir-10398/Downstream/919228;
Nearest TSS
ENST00000381078/Upstream/3243; ENST00000244537/Downstream/6535;
Nearest CpG islands
None/Target, chr6-CpG: 120/Upstream/2836, chr6-CpG: 28/Downstream/12071
Nearby gene
HIST1H3E(No orient, 2782)
Upstream sequence
gctggcagtgagctgagattgcaccactgcactgtagcctgggtgacagggagagactccatctcaaaTAACAATACTAATAATAAGAAAATGAACTTTA
Downstream sequence
CAGGGTCTTATATGATTGTGAAGTTCTATTATATTATAATTAGTACTGCAAATTGCACAGAAATGTAACTGATGTACATACAGGAAAATATGACATTAAC
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
Curate