Fusion event
HIV-HCG17 integration
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reference genome
Not given
End
30285143/30317366 (Hg38)
Location type
ncRNA_intronic
Nearest miRNA
hsa-mir-3143/Upstream/3169678; hsa-mir-10398/Downstream/266966;
Upstream sequence
TTATAACTAGTAAAGGACTAAACTTCTAGACTTGAACTTCTGATGGTCTGACTTCAAAAATATCTTATTTTTAAAATCATAGCACGGAGCACCTTGTATA
Downstream sequence
TCATGATATAGCTATATTACTTTGCAGGGTTTTTATGTCTAAGTTATTTTCTCCTCCTGTTCCACTTCCACCCTCCCATTCACTCTCTTCTCTCCTAGTA
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.