Basic Information
VIS ID
TVIS30003822
Fusion event
HIV-chr6 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr6
Cytoband
p21.33
Reference genome
GRCh37/hg19
Start
30468778/30501001 (Hg38)
End
30468778/30501001 (Hg38)
Orient
+
Location type
Intergenic
Fragile sites / regions
FRA6H
Nearest miRNA
hsa-mir-3143/Upstream/3353313; hsa-mir-10398/Downstream/83331;
Nearest TSS
ENST00000381078/Upstream/11489; ENST00000415195/Downstream/15265;
Nearest CpG islands
None/Target, chr6-CpG: 120/Upstream/10603, chr6-CpG: 20/Downstream/54508
Nearby gene
HLA-E(No orient, 6796)
Upstream sequence
AGTAAGTCAGCAGCTCAGGAAATCTACCCTCTCTGAGCCTCCCTGCAGTTCAAGCTGCTTAGGGAACTTGATATTTTCAAGACATCTGTCTACACATGGG
Downstream sequence
CAGCCCAGCCGCCGAGTTAGTGGTGGCAACCAAAGCGAACAGAGGACTTGGCTTCCTGAAAACAGAGGCAAAGAAGTATAGCTATCCAACCTTCTGAGTC
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
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