Basic Information
VIS ID
TVIS30003826
Fusion event
HIV-chr6 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr6
Cytoband
p21.33
Reference genome
GRCh37/hg19
Start
30834333/30866556 (Hg38)
End
30834333/30866556 (Hg38)
Orient
+
Location type
Intergenic
Fragile sites / regions
FRA6H
Nearest miRNA
hsa-mir-3143/Upstream/282139; hsa-mir-10398/Downstream/24327;
Nearest TSS
ENST00000381078/Upstream/18397; ENST00000506573/Downstream/9362;
Nearest CpG islands
None/Target, chr6-CpG: 120/Upstream/121893, chr6-CpG: 41/Downstream/17526
Nearby gene
DDR1(No orient, 16057)
Upstream sequence
gcaatttcttaaattaagacaacaacgaagtttgccacatcgattcactcttccttttgtgagagatttctctgtagcatgtgatgctgtttgatacatg
Downstream sequence
ttacccacagtaaaacttcttttgaaattggagtcaattctctcagaccctgctgcttctttattaactaagtttatgtaatattctaagtcctttgttg
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
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