VISDB Viral Integration Site DataBase

VIS ID

TVIS30003828

Fusion event

HIV-MICA integration

Validated

No

Detection method

QiaQuick PCR and Sequencing

Data source

download(RID)

Sample type

Disease

HIV-infected disease (HID)

Quality evaluation

Normal

Reported year

2013

PubMed ID

Virus name

HIV

Reference genome

Not given

Chromosome

chr6

Cytoband

p21.33

Reference genome

Start

End

31374102/31406325 (Hg38)

Orient

-

Location type

Intronic

Fragile sites / regions

Target gene

miRNAs that regulate target gene

hsa-mir-373-3p ; hsa-mir-520b ; hsa-mir-302c-3p ; hsa-mir-520c-3p ; hsa-mir-1273e ; hsa-mir-636 ; hsa-mir-31-5p ; hsa-mir-4649-3p ; hsa-mir-1827 ; hsa-mir-520f-3p ; hsa-mir-520e ; hsa-mir-520d-3p ; hsa-mir-520a-3p ; hsa-mir-372-3p ; hsa-mir-302e ; hsa-mir-302d-3p ; hsa-mir-302b-3p ; hsa-mir-302a-3p ; hsa-mir-665 ; hsa-mir-4768-3p ; hsa-mir-8485 ; hsa-mir-5695 ; hsa-mir-3691-3p ; hsa-mir-3613-3p ; hsa-mir-1278 ; hsa-mir-3145-5p ; hsa-mir-548x-3p ; hsa-mir-548j-3p ; hsa-mir-548aq-3p ; hsa-mir-548am-3p ; hsa-mir-548aj-3p ; hsa-mir-548ah-3p ; hsa-mir-548ae-3p ; hsa-mir-7154-5p ; hsa-mir-4738-3p ; hsa-mir-8060 ; hsa-mir-7157-5p ; hsa-mir-4310 ; hsa-mir-3617-3p ; hsa-mir-34a-3p ; hsa-mir-3941 ; hsa-mir-603 ; hsa-mir-362-3p ; hsa-mir-329-3p ; hsa-mir-6809-3p ; hsa-mir-6833-3p ; hsa-mir-4768-5p ; hsa-mir-5006-3p ; hsa-mir-4755-5p ; hsa-mir-6873-3p ; hsa-mir-4684-5p ; hsa-mir-211-5p ; hsa-mir-204-5p ; hsa-mir-623 ; hsa-mir-6817-3p ; hsa-mir-7110-3p ; hsa-mir-6832-3p ; hsa-mir-3938 ; hsa-mir-1468-3p ; hsa-mir-6501-3p ; hsa-mir-548p ; hsa-mir-5096 ; hsa-mir-197-3p ; hsa-mir-411-5p ; hsa-mir-6832-5p ; hsa-mir-4772-5p ; hsa-mir-383-5p ; hsa-mir-4524a-3p ; hsa-mir-4716-5p ; hsa-mir-6823-5p ; hsa-mir-2392 ; hsa-mir-4524b-3p ; hsa-mir-4526 ; hsa-mir-3660 ; hsa-mir-3942-3p ; hsa-mir-7977 ; hsa-mir-383-3p ; hsa-mir-4257 ; hsa-mir-6847-5p ; hsa-mir-7152-5p ; hsa-mir-3074-5p ; hsa-mir-4465 ; hsa-mir-26b-5p ; hsa-mir-26a-5p ; hsa-mir-1297 ; hsa-mir-4772-3p ; hsa-mir-6787-3p ; hsa-mir-1304-3p ; hsa-mir-4726-3p ; hsa-mir-6764-5p ; hsa-mir-1915-3p ; hsa-mir-6840-3p ; hsa-mir-6736-3p ; hsa-mir-6890-3p ; hsa-mir-1306-5p ; hsa-mir-6513-3p ; hsa-mir-8062 ; hsa-mir-619-5p ; hsa-mir-6513-5p ; hsa-mir-5089-5p ; hsa-mir-6728-5p ; hsa-mir-769-3p ; hsa-mir-450b-3p ; hsa-mir-3147 ; hsa-mir-4425 ; hsa-mir-6778-3p ; hsa-mir-4707-3p ; hsa-mir-150-5p ; hsa-mir-7107-5p ; hsa-mir-1234-3p ; hsa-mir-186-3p ; hsa-mir-520h ; hsa-mir-520g-3p ; hsa-mir-6504-3p ; hsa-mir-4786-5p ; hsa-mir-7162-3p ; hsa-mir-544b ; hsa-mir-6849-3p ; hsa-mir-323b-3p ; hsa-mir-4433a-3p ; hsa-mir-4459 ; hsa-mir-6765-3p ; hsa-mir-3622b-3p ; hsa-mir-3622a-3p ; hsa-mir-4293 ; hsa-mir-6771-5p ; hsa-mir-425-3p ; hsa-mir-7160-5p ; hsa-mir-4722-5p ; hsa-mir-6884-5p ; hsa-mir-485-5p ; hsa-mir-6746-5p ; hsa-mir-6780b-3p ; hsa-mir-4780 ; hsa-mir-6866-3p ; hsa-mir-188-5p ; hsa-mir-4478 ; hsa-mir-4419b ; hsa-mir-3929 ; hsa-mir-940 ; hsa-mir-6893-5p ; hsa-mir-6808-5p

Nearest miRNA

hsa-mir-3143/Upstream/51009; hsa-mir-10398/Downstream/227462;

Nearest TSS

Nearest CpG islands

None/Target, chr6-CpG: 120/Upstream/2424, chr6-CpG: 39/Downstream/87584

Upstream sequence

ctgtcttctggataaaagccagtttatctggggtgggatgttatctcgtaggagttttgatttgccttcatctgttgacgaatgatgttgagcacctttt

Downstream sequence

catatacctgtttgccatttatatgtcttcttttgagaaatgactattcagatcttttctcatttttaaattggattattatattttttttcctatagtt