Basic Information
VIS ID
TVIS30003830
Fusion event
HIV-chr6 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr6
Cytoband
p21.33
Reference genome
GRCh37/hg19
Start
31529229/31561452 (Hg38)
End
31529229/31561452 (Hg38)
Orient
-
Location type
Intronic
Fragile sites / regions
FRA6H
Target gene
LOC100287329 ; LTA
miRNAs that regulate target gene
hsa-mir-34a-5p
Nearest miRNA
hsa-mir-3143/Upstream/206136; hsa-mir-10398/Downstream/72335;
Nearest TSS
ENST00000381078/Upstream/13025; ENST00000454783/Downstream/10602;
Nearest CpG islands
None/Target, chr6-CpG: 120/Upstream/19333, chr6-CpG: 80/Downstream/19207
Nearby gene
NFKBIL1(No orient, 2623)
Upstream sequence
TCCTAACACCACAAATCCTCTCAACGTCTGTCCAAAAGGTGGGTGGTGGTggccaggcacctcactcctgtaatcacagcactttgggaggccaaggtgg
Downstream sequence
gagcactttgggaggatcacttgaggccaggagttcgagaccagcctggccaacatggtgaaaccccgtctctactaaaaatataaaaactagctgggtg
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
Curate