Basic Information
VIS ID
TVIS30003832
Fusion event
HIV-chr6 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr6
Cytoband
p21.33
Reference genome
GRCh37/hg19
Start
31531299/31563522 (Hg38)
End
31531299/31563522 (Hg38)
Orient
-
Location type
Intronic
Fragile sites / regions
FRA6H
Target gene
LOC100287329 ; LTA
miRNAs that regulate target gene
hsa-mir-34a-5p
Nearest miRNA
hsa-mir-3143/Upstream/208206; hsa-mir-10398/Downstream/70265;
Nearest TSS
ENST00000381078/Upstream/15095; ENST00000454783/Downstream/8532;
Nearest CpG islands
None/Target, chr6-CpG: 120/Upstream/21403, chr6-CpG: 80/Downstream/17137
Nearby gene
NFKBIL1(No orient, 4693)
Upstream sequence
GAACATCACGCACAGTAGTATAATGGGGAGTCAACAAAGAATGAGTAAAAGTTGTGTCCAAGAACACTGATGACTCTCTGAGATTAGCTGGCCAGGATTA
Downstream sequence
GTTATAGGCCTCTTATGGTGACTCAGCTGTCTACTGCAGCGCTTGGCAGCCTAAGACAAAGCCCCAAGAATGAGACCACTTAGTTTACCCAAGTCAAttt
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
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