Basic Information
VIS ID
TVIS30003844
Fusion event
HIV-TAP1 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr6
Cytoband
p21.32
Reference genome
GRCh37/hg19
Start
32816527/32848750 (Hg38)
End
32816527/32848750 (Hg38)
Orient
+
Location type
Exonic
Fragile sites / regions
FRA6H
Target gene
TAP1
miRNAs that regulate target gene
hsa-mir-346 ; hsa-mir-21-5p
Nearest miRNA
hsa-mir-1236/Upstream/98771; hsa-mir-10398/Downstream/359085;
Nearest TSS
ENST00000381078/Upstream/520; ENST00000467593/Downstream/1392;
Nearest CpG islands
None/Target, chr6-CpG: 120/Upstream/4688, chr6-CpG: 118/Downstream/4322
Upstream sequence
CCTGTAGCACTAAGACATCTGGGCGGTTTGGGTAGGCAAAGGAGACATCTTGGAACTGGACAAGGCCCTCCAAGTGTAAGGGAGTCAACAGACCACTGGG
Downstream sequence
TGGGCAGCGAGGGGTGCGGTCCAGGTACTCAAATATTTTCTCTGAGGAGCCCACAGCCTTCTGTACTCTGGGGTAGATGGAGAGCAGTACCTAGAGGGAG
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
Curate