Basic Information
VIS ID
TVIS30003847
Fusion event
HIV-chr6 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr6
Cytoband
p21.32
Reference genome
GRCh37/hg19
Start
32830846/32863069 (Hg38)
End
32830846/32863069 (Hg38)
Orient
-
Location type
Intergenic
Fragile sites / regions
FRA6H
Nearest miRNA
hsa-mir-1236/Upstream/113090; hsa-mir-10398/Downstream/344766;
Nearest TSS
ENST00000381078/Upstream/6972; ENST00000584808/Downstream/73817;
Nearest CpG islands
None/Target, chr6-CpG: 120/Upstream/8476, chr6-CpG: 35/Downstream/16652
Nearby gene
PSMB9(No orient, 3218)
Upstream sequence
tgggaccctgtgtcaaataaataaaCAGCAGTTATAAAGAAAATTAACTCTTTTAGAACCAGGTGTTAAAAATGTTACACATAAAATATACATATAAAAT
Downstream sequence
AATAttataatttcaaatacatttattagaacaagaaaagttaaaataaaggacctagaaattctactcaaaaatttggaaaaagagaagttgagcaaac
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
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