VISDB Viral Integration Site DataBase

VIS ID

TVIS30003857

Fusion event

HIV-BAK1 integration

Validated

No

Detection method

QiaQuick PCR and Sequencing

Data source

download(RID)

Sample type

Disease

HIV-infected disease (HID)

Quality evaluation

Normal

Reported year

2013

PubMed ID

Virus name

HIV

Reference genome

Not given

Chromosome

chr6

Cytoband

p21.31

Reference genome

Start

End

33541175/33573398 (Hg38)

Orient

+

Location type

UTR3

Fragile sites / regions

Target gene

miRNAs that regulate target gene

hsa-mir-125b-5p ; hsa-mir-125a-5p ; hsa-mir-375 ; hsa-mir-92a-3p ; hsa-mir-887-5p ; hsa-mir-4507 ; hsa-mir-3940-5p ; hsa-mir-6779-5p ; hsa-mir-6780a-5p ; hsa-mir-3689c ; hsa-mir-3689b-3p ; hsa-mir-3689a-3p ; hsa-mir-30b-3p ; hsa-mir-1273h-5p ; hsa-mir-6788-5p ; hsa-mir-30c-2-3p ; hsa-mir-30c-1-3p ; hsa-mir-3606-5p ; hsa-mir-4425 ; hsa-mir-1257 ; hsa-mir-142-3p ; hsa-mir-6073 ; hsa-mir-92a-1-5p ; hsa-mir-920 ; hsa-mir-5591-5p ; hsa-mir-6726-5p ; hsa-mir-4300 ; hsa-mir-6090 ; hsa-mir-6827-5p ; hsa-mir-4790-3p ; hsa-mir-6754-3p ; hsa-mir-412-3p ; hsa-mir-20b-3p ; hsa-mir-6765-3p ; hsa-mir-3622b-3p ; hsa-mir-3622a-3p ; hsa-mir-4506 ; hsa-mir-4680-5p ; hsa-mir-6787-3p ; hsa-mir-8073 ; hsa-mir-221-5p ; hsa-mir-7157-5p ; hsa-mir-4310 ; hsa-mir-1245b-3p ; hsa-mir-1272 ; hsa-mir-3145-5p ; hsa-mir-6734-5p ; hsa-mir-4710 ; hsa-mir-4450 ; hsa-mir-5194 ; hsa-mir-6738-5p ; hsa-mir-1914-3p ; hsa-mir-423-5p ; hsa-mir-3184-5p ; hsa-mir-32-5p ; hsa-mir-25-3p ; hsa-mir-363-3p ; hsa-mir-367-3p ; hsa-mir-92b-3p ; hsa-mir-34a-5p ; hsa-mir-1227-3p ; hsa-mir-331-3p ; hsa-mir-361-3p ; hsa-mir-3679-3p ; hsa-mir-378j ; hsa-mir-4308 ; hsa-mir-6757-3p ; hsa-mir-6839-5p ; hsa-mir-6889-3p

Nearest miRNA

hsa-mir-1236/Upstream/134961; hsa-mir-10398/Downstream/124730;

Nearest TSS

Nearest CpG islands

None/Target, chr6-CpG: 120/Upstream/1836, chr6-CpG: 34/Downstream/19717

Upstream sequence

CCAGGCTCAGGTCCTAGTCCCATCTCTTAGGGTGCTGATCTTCCAGAATAGCTGAATCCTGGGGAACATAGACCCACCAATCCCCACACCCCAGACGTCC

Downstream sequence

TGGCCTCAGGTAGAATGGTGGGAATGGGCTCTCACAAGGGTATTATAAAAAGCTAAAACCGTTAAACACTTTCTGGGGAGAAGTGGCTCCCAGTCTCTTG