VISDB Viral Integration Site DataBase

VIS ID

TVIS30003877

Fusion event

HIV-STK38 integration

Validated

No

Detection method

QiaQuick PCR and Sequencing

Data source

download(RID)

Sample type

Disease

HIV-infected disease (HID)

Quality evaluation

Normal

Reported year

2013

PubMed ID

Virus name

HIV

Reference genome

Not given

Chromosome

chr6

Cytoband

p21.31

Reference genome

Start

End

36485552/36517775 (Hg38)

Orient

+

Location type

Exonic

Fragile sites / regions

Target gene

miRNAs that regulate target gene

hsa-mir-124-3p ; hsa-mir-103a-3p ; hsa-mir-19b-3p ; hsa-mir-16-5p ; hsa-mir-454-3p ; hsa-let-7b-5p ; hsa-mir-4298 ; hsa-mir-8061 ; hsa-mir-4760-5p ; hsa-mir-4665-5p ; hsa-mir-1275 ; hsa-mir-503-3p ; hsa-mir-5010-5p ; hsa-mir-4525 ; hsa-mir-7111-5p ; hsa-mir-6870-5p ; hsa-mir-5698 ; hsa-mir-4723-5p ; hsa-mir-625-5p ; hsa-mir-107 ; hsa-mir-548e-5p ; hsa-mir-15a-5p ; hsa-mir-15b-5p ; hsa-mir-195-5p ; hsa-mir-424-5p ; hsa-mir-6838-5p ; hsa-mir-497-5p ; hsa-mir-3658 ; hsa-mir-3156-3p ; hsa-mir-1260b ; hsa-mir-1260a ; hsa-mir-188-3p ; hsa-mir-4742-5p ; hsa-mir-548o-3p ; hsa-mir-1323 ; hsa-mir-1322 ; hsa-mir-101-5p ; hsa-mir-5692a ; hsa-mir-5582-3p ; hsa-mir-19a-3p ; hsa-mir-887-5p ; hsa-mir-6780a-5p ; hsa-mir-6779-5p ; hsa-mir-3689c ; hsa-mir-3689b-3p ; hsa-mir-3689a-3p ; hsa-mir-30b-3p ; hsa-mir-1273h-5p ; hsa-mir-6788-5p ; hsa-mir-30c-2-3p ; hsa-mir-30c-1-3p ; hsa-mir-4425 ; hsa-mir-8085 ; hsa-mir-6731-5p ; hsa-mir-6878-5p ; hsa-mir-4644 ; hsa-mir-4306 ; hsa-mir-185-5p ; hsa-mir-1468-3p ; hsa-mir-145-3p ; hsa-mir-1253 ; hsa-mir-4698 ; hsa-mir-4259 ; hsa-mir-561-3p ; hsa-mir-548at-5p ; hsa-mir-433-3p

Nearest miRNA

hsa-mir-1236/Upstream/852986; hsa-mir-10398/Downstream/104661;

Nearest TSS

Nearest CpG islands

None/Target, chr6-CpG: 120/Upstream/74413, chr6-CpG: 40/Downstream/29443

Upstream sequence

GAACAAAAAGAAAAAATGACCTTTCATCGTCAAGTAATTACCTCCAGGCAGGAACTCCATGATTAGGTAGAGGTTTAGCTTATCCTGAAAACTATAGAAC

Downstream sequence

ATTTTCACAACCCACAAACTGTCTGCCTCCACTAGAATGTCACGCTCCGCACGAATGTGGCCAACCTGGAGGTATATGCATTTGATTAATGACAAAGCTT