Basic Information
VIS ID
TVIS30003878
Fusion event
HIV-CMTR1 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr6
Cytoband
p21.2
Reference genome
GRCh37/hg19
Start
37435188/37467412 (Hg38)
End
37435188/37467412 (Hg38)
Orient
+
Location type
Intronic
Fragile sites / regions
FRA6H
Target gene
CMTR1
miRNAs that regulate target gene
hsa-mir-335-5p ; hsa-mir-1226-3p ; hsa-mir-193b-3p ; hsa-mir-412-3p
Nearest miRNA
hsa-mir-1236/Upstream/844900; hsa-mir-10398/Downstream/87953;
Nearest TSS
ENST00000381078/Upstream/7753; ENST00000475364/Downstream/6156;
Nearest CpG islands
None/Target, chr6-CpG: 120/Upstream/112546, chr6-CpG: 30/Downstream/32207
Upstream sequence
tttaggattttcaagatatctattagatttagtcacaccattctcagagaatgtattctgtatgattttgatcctttgaaacttaatgaagcttatttta
Downstream sequence
tgacccatcatatgctctatcttggtgttgcttggcataatgttctataaatgttaatttggtcaagttggttcatagtgtttttcaaattttctaaatc
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
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