Basic Information
VIS ID
TVIS30003879
Fusion event
HIV-LINC02520 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr6
Cytoband
p21.2
Reference genome
GRCh37/hg19
Start
37477774/37509998 (Hg38)
End
37477774/37509998 (Hg38)
Orient
+
Location type
ncRNA_intronic
Fragile sites / regions
FRA6H
Target gene
LINC02520
Nearest miRNA
hsa-mir-1236/Upstream/887486; hsa-mir-10398/Downstream/45367;
Nearest TSS
ENST00000381078/Upstream/2650; ENST00000414875/Downstream/35147;
Nearest CpG islands
None/Target, chr6-CpG: 120/Upstream/9974, chr6-CpG: 59/Downstream/25764
Upstream sequence
tcacaaacataatgttacacgaaaagacaagttgcagaggaatgtaaaccagaggatcccattcacttaaagttcaaaaacattcaaaatattcaaaacg
Downstream sequence
gtgctacatactgcttgtcttagtccctttgtgctgcgataacagaataccacagactggggaatttaagaaaagaaatgtattggcttgcagttctgga
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
Curate