Basic Information
VIS ID
TVIS30003895
Fusion event
HIV-SUPT3H integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr6
Cytoband
p21.1
Reference genome
GRCh37/hg19
Start
45157997/45190260 (Hg38)
End
45157997/45190260 (Hg38)
Orient
-
Location type
Intronic
Fragile sites / regions
FRA6H
Target gene
SUPT3H
miRNAs that regulate target gene
hsa-mir-26b-5p ; hsa-mir-15b-5p
Nearest miRNA
hsa-mir-10398/Upstream/754538; hsa-mir-10524/Downstream/7414;
Nearest TSS
ENST00000381078/Upstream/186560; ENST00000483243/Downstream/137897;
Nearest CpG islands
None/Target, chr6-CpG: 120/Upstream/462594, chr6-CpG: 91/Downstream/187261
Upstream sequence
attgcaactctccaagtgataatatatagcatgaaatatttcccaaaAAATGGGACTAAGAAATAAAAATGTTATGGTTAAAAAAGAAATCTATACATAT
Downstream sequence
CTTGAAAAAGATTCAAATTCCATGAAATACAGTTTGAGAAATAGTATTTTAACTGCAAACTAAAATGGATTAGGAATTCTCATTGGCCCAAAGAAATCAG
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
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