Basic Information
VIS ID
TVIS30003898
Fusion event
HIV-FBXO9 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr6
Cytoband
p12.1
Reference genome
GRCh37/hg19
Start
52950324/53085526 (Hg38)
End
52950324/53085526 (Hg38)
Orient
+
Location type
Intronic
Target gene
FBXO9
miRNAs that regulate target gene
hsa-mir-192-3p ; hsa-mir-1277-5p ; hsa-mir-587 ; hsa-mir-5011-5p ; hsa-mir-190a-3p ; hsa-mir-4789-5p ; hsa-mir-3941 ; hsa-mir-603 ; hsa-mir-362-3p ; hsa-mir-329-3p ; hsa-mir-8485 ; hsa-mir-5189-3p ; hsa-mir-4753-3p ; hsa-mir-130b-5p ; hsa-mir-1283 ; hsa-mir-6769b-3p ; hsa-mir-4723-3p ; hsa-mir-3183 ; hsa-mir-6800-3p ; hsa-mir-4753-5p ; hsa-mir-6768-3p ; hsa-mir-4729
Nearest miRNA
hsa-mir-10398/Upstream/936485; hsa-mir-10524/Downstream/191467;
Nearest TSS
ENST00000381078/Upstream/6661; ENST00000473318/Downstream/5366;
Nearest CpG islands
None/Target, chr6-CpG: 120/Upstream/19566, chr6-CpG: 127/Downstream/262293
Upstream sequence
cttagaatagccatgtaaaatctgatgaaagttctcagttgatgagggaatttagttatttctagtacatgtagcattttaagataaccagaatcatgac
Downstream sequence
tgacactgtcacatcaggactatcagacttttatataaatttcatctagtctttagaatactcacattaataacatctatacaaatataacttTAGAaaa
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
Curate