Basic Information
VIS ID
TVIS30003899
Fusion event
HIV-chr6 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr6
Cytoband
q11.1
Reference genome
GRCh37/hg19
Start
57525990/60558243 (Hg38)
End
57525990/60558243 (Hg38)
Orient
+
Location type
Intergenic
Nearest miRNA
hsa-mir-10398/Upstream/3168031; hsa-mir-10524/Downstream/10818717;
Nearest TSS
ENST00000381078/Upstream/2519777; ENST00000622616/Downstream/164905;
Nearest CpG islands
None/Target, chr6-CpG: 120/Upstream/2596693, chr6-CpG: 45/Downstream/1727707
Nearby gene
PRIM2(No orient, 12614)
Upstream sequence
taggcagtagcatatcactccaatccaatcaggagttggagtgacttgaggcatggttttagtctttatgagagctggtctatttttcactttgcacatc
Downstream sequence
ttcctgattgtagtttttcaggagtcccagccagaagccttgggtttttatcaaggctagtattccttggaaatcccaggactccaatttttatcttccc
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
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