Basic Information
VIS ID
TVIS30003901
Fusion event
HIV-EYS integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr6
Cytoband
q12
Reference genome
GRCh37/hg19
Start
64746740/64036847 (Hg38)
End
64746740/64036847 (Hg38)
Orient
+
Location type
Intronic
Target gene
EYS
miRNAs that regulate target gene
hsa-mir-124-3p ; hsa-mir-510-3p ; hsa-mir-376a-5p ; hsa-mir-4680-5p ; hsa-mir-494-3p
Nearest miRNA
hsa-mir-10398/Upstream/6646635; hsa-mir-10524/Downstream/7340113;
Nearest TSS
ENST00000381078/Upstream/230011; ENST00000424274/Downstream/29529;
Nearest CpG islands
None/Target, chr6-CpG: 120/Upstream/400287, chr6-CpG: 22/Downstream/1264513
Upstream sequence
aggacactgctaaatactttgcctatatcttctctttcaatctatgatgtaataaatgttatctaccttctacagatgaggacacttggcttaagtaact
Downstream sequence
tgctctagaccacacggaggatagtggcaatgctaggatttgaactcgggaccatctaattccaatgcacatgatttcaactATTCTTAGTAACTAGGAT
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
Curate