Basic Information
VIS ID
TVIS30003903
Fusion event
HIV-SENP6 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr6
Cytoband
q14.1
Reference genome
GRCh37/hg19
Start
76369751/75660035 (Hg38)
End
76369751/75660035 (Hg38)
Orient
+
Location type
Intronic
Fragile sites / regions
FRA6D
Target gene
SENP6
miRNAs that regulate target gene
hsa-mir-16-5p ; hsa-mir-640 ; hsa-mir-510-3p ; hsa-mir-488-3p ; hsa-mir-5696 ; hsa-mir-5701 ; hsa-mir-4796-5p ; hsa-mir-1284 ; hsa-mir-4729
Nearest miRNA
hsa-mir-10398/Upstream/231562; hsa-mir-10524/Downstream/2879228;
Nearest TSS
ENST00000381078/Upstream/12743; ENST00000476060/Downstream/6836;
Nearest CpG islands
None/Target, chr6-CpG: 120/Upstream/57188, chr6-CpG: 104/Downstream/88685
Upstream sequence
aaagttaacattgatctaaaattaccatttaatccacaagtcccattcaaatttcagctaaataatgtcctttatgcttatagaattgaattcagggtca
Downstream sequence
tgtgctgcattgaattgctgcgaatctttagtctctttcaatagaaataatttcacagtcttatctttttcataatcttggcatttgttgaggagtatag
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
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