VISDB Viral Integration Site DataBase

VIS ID

TVIS30003905

Fusion event

HIV-MYO6 integration

Validated

No

Detection method

QiaQuick PCR and Sequencing

Data source

download(RID)

Sample type

Disease

HIV-infected disease (HID)

Quality evaluation

Normal

Reported year

2013

PubMed ID

Virus name

HIV

Reference genome

Not given

Chromosome

chr6

Cytoband

q14.1

Reference genome

Start

End

76540451/75830734 (Hg38)

Orient

+

Location type

Intronic

Fragile sites / regions

Target gene

miRNAs that regulate target gene

hsa-mir-145-5p ; hsa-mir-143-3p ; hsa-mir-335-5p ; hsa-mir-155-5p ; hsa-mir-324-3p ; hsa-mir-320a ; hsa-mir-92a-3p ; hsa-mir-22-3p ; hsa-mir-140-5p ; hsa-mir-146a-5p ; hsa-mir-146b-5p ; hsa-mir-155-3p ; hsa-mir-4719 ; hsa-mir-4801 ; hsa-mir-4731-3p ; hsa-mir-548x-3p ; hsa-mir-548j-3p ; hsa-mir-548aq-3p ; hsa-mir-548am-3p ; hsa-mir-548aj-3p ; hsa-mir-548ah-3p ; hsa-mir-548ae-3p ; hsa-mir-548z ; hsa-mir-548h-3p ; hsa-mir-548d-3p ; hsa-mir-548bb-3p ; hsa-mir-548ac ; hsa-mir-382-3p ; hsa-mir-6848-3p ; hsa-mir-6843-3p ; hsa-mir-3187-3p ; hsa-mir-4435 ; hsa-mir-588 ; hsa-mir-4701-5p ; hsa-mir-548s ; hsa-mir-197-3p ; hsa-mir-6131 ; hsa-mir-4755-3p ; hsa-mir-3663-5p ; hsa-mir-4716-5p ; hsa-mir-4781-3p ; hsa-mir-1264 ; hsa-mir-3692-3p ; hsa-mir-140-3p

Nearest miRNA

hsa-mir-10398/Upstream/402261; hsa-mir-10524/Downstream/2708529;

Nearest TSS

Nearest CpG islands

None/Target, chr6-CpG: 120/Upstream/81184, chr6-CpG: 132/Downstream/1631780

Upstream sequence

ATAAATTGAATATATATTTTGGAGAAACTGTATACCTCTTGGATATATCAACATTGTTAGGAGCAAGTATTTTACACAGGGTGAGGAAGAATACTTTTGT

Downstream sequence

AGTCAACTAATGGGGCAGGCTTACCATACATCATTATCTGTGTTAAATGCCTGTGTCCTCTAAGAGATGTCTGCCCAGGTGAAAGCAGGATATAATAAAA