Basic Information
VIS ID
TVIS30003909
Fusion event
HIV-LOC107986617 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr6
Cytoband
q14.1
Reference genome
GRCh37/hg19
Start
82822708/82112991 (Hg38)
End
82822708/82112991 (Hg38)
Orient
+
Location type
Intronic
Target gene
LOC107986617
Nearest miRNA
hsa-mir-10398/Upstream/3573682; hsa-mir-1202/Downstream/8199751;
Nearest TSS
ENST00000381078/Upstream/143452; ENST00000535040/Downstream/60587;
Nearest CpG islands
None/Target, chr6-CpG: 120/Upstream/358903, chr6-CpG: 49/Downstream/134291
Nearby gene
IBTK(No orient, 56996)
Upstream sequence
GAGGCGCTCAGAAAAGAAACTCAAGTGGAACTATCCTCCACTTTGATTTTGTTGTTTACTTCCTGCTCAGGCCTCAGTGTAACTATGAAAAAAACATTTT
Downstream sequence
CTTAATGGCTTATTAGACATTAGTACCTAGTCAAAGTCAAGCTTGTTTGAAAATAGACTTTATTTTCCATTTTCAAATTCTAATTAGCTTCATATTAAAT
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
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