Basic Information
VIS ID
TVIS30003911
Fusion event
HIV-chr6 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr6
Cytoband
q16.1
Reference genome
GRCh37/hg19
Start
99045216/98597340 (Hg38)
End
99045216/98597340 (Hg38)
Orient
-
Location type
Intergenic
Nearest miRNA
hsa-mir-10398/Upstream/572719; hsa-mir-1202/Downstream/527269;
Nearest TSS
ENST00000381078/Upstream/382657; ENST00000328345/Downstream/235168;
Nearest CpG islands
None/Target, chr6-CpG: 120/Upstream/1314017, chr6-CpG: 50/Downstream/227178
Nearby gene
POU3F2(No orient, 237364)
Upstream sequence
agaaaaaattgataagctggactttagtaaaattaaaatattctgctctgcaaaatacattgtcaagagaataaaaagacaaaccataaactgtgagaaa
Downstream sequence
atacttgcaaaagacatgtttgataagggactcatccaaaatatacaaaaaaatcctaaaactcaacaataagaaaacaaatgattaaaaaatgagccaa
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
Curate