Basic Information
VIS ID
TVIS30003913
Fusion event
HIV-chr6 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr6
Cytoband
q16.2
Reference genome
GRCh37/hg19
Start
100359933/99912057 (Hg38)
End
100359933/99912057 (Hg38)
Orient
+
Location type
Intergenic
Nearest miRNA
hsa-mir-10398/Upstream/787361; hsa-mir-1202/Downstream/6872068;
Nearest TSS
ENST00000381078/Upstream/305283; ENST00000452482/Downstream/81887;
Nearest CpG islands
None/Target, chr6-CpG: 120/Upstream/292656, chr6-CpG: 67/Downstream/81473
Nearby gene
MCHR2(No orient, 7853)
Upstream sequence
ggatttaagaagcttacaatgtagtatataagataattatgcaagaaatatcactgattatactataatagagggagttacaaagtattatgtaagtact
Downstream sequence
aacaagaggatggctaacttggcttgctttggggttaggaatagaaggaaataatatttaaacttggtgtaatgagcagaggtttgttaggtggagggga
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
Curate