Basic Information
VIS ID
TVIS30003914
Fusion event
HIV-chr6 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr6
Cytoband
q16.3
Reference genome
GRCh37/hg19
Start
103807819/103359944 (Hg38)
End
103807819/103359944 (Hg38)
Orient
-
Location type
Intergenic
Nearest miRNA
hsa-mir-10398/Upstream/4235248; hsa-mir-1202/Downstream/3424181;
Nearest TSS
ENST00000381078/Upstream/1431801; ENST00000635857/Downstream/1372426;
Nearest CpG islands
None/Target, chr6-CpG: 120/Upstream/1956846, chr6-CpG: 79/Downstream/1499300
Nearby gene
GRIK2(No orient, 1289861)
Upstream sequence
gtaacaatattgaatcagtaataaaaagactcccaacaaaggaaagtccaggactggatggcttcacttcagaattctactaaacttacaaagaactagt
Downstream sequence
attatcttcctcaacccatttcaaaaaaaatcaagaggaaggactttccctaactaattatataaggccagcattaccttgatatctaaaccagataagg
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
Curate