Basic Information
VIS ID
TVIS30003919
Fusion event
HIV-MICAL1 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr6
Cytoband
q21
Reference genome
GRCh37/hg19
Start
109782419/109461216 (Hg38)
End
109782419/109461216 (Hg38)
Orient
+
Location type
Intronic
Fragile sites / regions
FRA6F
Target gene
MICAL1
miRNAs that regulate target gene
hsa-mir-124-3p ; hsa-mir-149-5p
Nearest miRNA
hsa-mir-10398/Upstream/2676996; hsa-mir-1202/Downstream/9607831;
Nearest TSS
ENST00000381078/Upstream/5229; ENST00000423747/Downstream/4752;
Nearest CpG islands
None/Target, chr6-CpG: 120/Upstream/4774, chr6-CpG: 53/Downstream/21675
Upstream sequence
tatgacaggccctggtatgtgatgttccctgccttgtgtccaagtgttctcattgttcaattcccatctatgagtgagaacatgtggtgtttggttttct
Downstream sequence
gttcctgtgttagtttgctgagaatgatgatttccagtttcatccatgtccctgcaaaggacatgaactcatccatccttttttatggctgcatagtatt
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
Curate