Basic Information
VIS ID
TVIS30003921
Fusion event
HIV-LOC107986637 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr6
Cytoband
q21
Reference genome
GRCh37/hg19
Start
113675417/113354215 (Hg38)
End
113675417/113354215 (Hg38)
Orient
-
Location type
Intronic
Fragile sites / regions
FRA6F
Target gene
LOC107986637
Nearest miRNA
hsa-mir-10398/Upstream/6569995; hsa-mir-1202/Downstream/5714832;
Nearest TSS
ENST00000381078/Upstream/872579; ENST00000415883/Downstream/13729;
Nearest CpG islands
None/Target, chr6-CpG: 120/Upstream/986687, chr6-CpG: 205/Downstream/504343
Upstream sequence
TAAACACAAGTTTCTTCAAAAAAATAAAACATATTCCTTTCAGTGCAAACACTTTGATATATTAATATATTATCCATTCATTTGCCTTATTATGTAGTAC
Downstream sequence
TTAGTGTACTGCCTGATATTGAAAACATCTAATAAATAGGTGCTGAATGAAATATACAGGAATCATTTGACATTTTCTTCATTACTCAGATTACTAAATT
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
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