Basic Information
VIS ID
TVIS30003929
Fusion event
HIV-REPS1 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr6
Cytoband
q24.1
Reference genome
GRCh37/hg19
Start
139240536/138919399 (Hg38)
End
139240536/138919399 (Hg38)
Orient
-
Location type
Intronic
Target gene
REPS1
miRNAs that regulate target gene
hsa-mir-423-5p ; hsa-mir-193b-3p ; hsa-let-7b-5p ; hsa-let-7a-5p ; hsa-mir-6885-3p ; hsa-mir-653-5p ; hsa-mir-1273e ; hsa-mir-4452 ; hsa-mir-183-3p ; hsa-mir-1267 ; hsa-mir-4470 ; hsa-mir-8073 ; hsa-mir-3128 ; hsa-mir-221-5p ; hsa-mir-6749-3p ; hsa-mir-6509-3p ; hsa-mir-2116-3p ; hsa-mir-1273g-3p ; hsa-mir-181a-2-3p
Nearest miRNA
hsa-mir-10398/Upstream/484105; hsa-mir-1202/Downstream/1285853;
Nearest TSS
ENST00000381078/Upstream/3185; ENST00000461027/Downstream/10598;
Nearest CpG islands
None/Target, chr6-CpG: 120/Upstream/123067, chr6-CpG: 110/Downstream/67962
Upstream sequence
accaagctgtcaccatcttcccttgcctgattaccgctatctcctaaattgtgtcctgttttgtctcgccttcttttggcctattaccattaggagagcc
Downstream sequence
agactgatccagttaaaaagcaggctcaaatcatgtcactcctccattcaaaccttcgattggcttttcatctaagtcaaagaaagtctgacactgcctc
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
Curate