VISDB Viral Integration Site DataBase

VIS ID

TVIS30003940

Fusion event

HIV-TAB2 integration

Validated

No

Detection method

QiaQuick PCR and Sequencing

Data source

download(RID)

Sample type

Disease

HIV-infected disease (HID)

Quality evaluation

Normal

Reported year

2013

PubMed ID

Virus name

HIV

Reference genome

Not given

Chromosome

chr6

Cytoband

q25.1

Reference genome

Start

End

149647707/149326571 (Hg38)

Orient

+

Location type

Intronic

Target gene

miRNAs that regulate target gene

hsa-mir-155-5p ; hsa-let-7b-5p ; hsa-mir-23b-3p ; hsa-mir-181a-5p ; hsa-mir-98-5p ; hsa-mir-15b-5p ; hsa-mir-196a-5p ; hsa-let-7f-5p ; hsa-let-7a-5p ; hsa-mir-142-3p ; hsa-mir-1273e ; hsa-mir-6086 ; hsa-mir-377-5p ; hsa-mir-655-5p ; hsa-mir-4708-5p ; hsa-mir-4698 ; hsa-mir-8063 ; hsa-mir-583 ; hsa-mir-4311 ; hsa-mir-1276 ; hsa-mir-450a-1-3p ; hsa-mir-6734-5p ; hsa-mir-222-5p ; hsa-mir-6073 ; hsa-mir-5681b ; hsa-mir-4471 ; hsa-mir-8059 ; hsa-mir-4668-5p ; hsa-mir-1292-5p ; hsa-mir-3148 ; hsa-mir-6738-5p ; hsa-mir-5194 ; hsa-mir-1914-3p ; hsa-mir-423-5p ; hsa-mir-3184-5p ; hsa-mir-936 ; hsa-mir-4678 ; hsa-mir-6783-5p ; hsa-mir-548m ; hsa-mir-199b-3p ; hsa-mir-3129-5p ; hsa-mir-199a-3p ; hsa-mir-651-3p ; hsa-mir-7-2-3p ; hsa-mir-7-1-3p ; hsa-mir-5688 ; hsa-mir-495-3p ; hsa-mir-342-3p

Nearest miRNA

hsa-mir-10398/Upstream/8642688; hsa-mir-1202/Downstream/1776104;

Nearest TSS

Nearest CpG islands

None/Target, chr6-CpG: 120/Upstream/8189, chr6-CpG: 124/Downstream/124129

Upstream sequence

ATTGGATAAATGACATGTTATCATGGCAGAAAGAATTATAAGGTACATGTTGGTCTTTTCAGCCTTGTGtttttgttattatttttttttttttgagacg

Downstream sequence

gggtcttgctcttttgtccaggctagagtgcaatgttgcaatctcagctcactgcaacctttgcctcctgggttcaagcaattctcctgcctcagcgtcc