VISDB Viral Integration Site DataBase

VIS ID

TVIS30003943

Fusion event

HIV-IPCEF1 integration

Validated

No

Detection method

QiaQuick PCR and Sequencing

Data source

download(RID)

Sample type

Disease

HIV-infected disease (HID)

Quality evaluation

Normal

Reported year

2013

PubMed ID

Virus name

HIV

Reference genome

Not given

Chromosome

chr6

Cytoband

q25.2

Reference genome

Start

End

154509741/154188607 (Hg38)

Orient

+

Location type

Intronic

Target gene

miRNAs that regulate target gene

hsa-mir-124-3p ; hsa-mir-10b-5p ; hsa-mir-10a-5p ; hsa-let-7b-5p ; hsa-mir-521 ; hsa-mir-5006-3p ; hsa-mir-3620-5p ; hsa-mir-4755-5p ; hsa-mir-1587 ; hsa-mir-4674 ; hsa-mir-623 ; hsa-mir-664b-5p ; hsa-mir-8064 ; hsa-mir-6832-3p ; hsa-mir-216b-3p ; hsa-mir-5582-5p ; hsa-mir-665 ; hsa-mir-6771-5p ; hsa-mir-650 ; hsa-mir-3612 ; hsa-mir-7160-5p ; hsa-mir-4722-5p ; hsa-mir-6884-5p ; hsa-mir-485-5p ; hsa-mir-1827 ; hsa-mir-676-5p ; hsa-mir-4649-3p ; hsa-mir-6746-5p ; hsa-mir-7113-5p ; hsa-mir-6754-5p ; hsa-mir-4441 ; hsa-mir-4270 ; hsa-mir-4768-3p ; hsa-mir-5690 ; hsa-mir-4756-5p ; hsa-mir-4739 ; hsa-mir-1321 ; hsa-mir-4478 ; hsa-mir-4419b ; hsa-mir-3929 ; hsa-mir-940 ; hsa-mir-6893-5p ; hsa-mir-6808-5p ; hsa-mir-6753-5p ; hsa-mir-34b-3p

Nearest miRNA

hsa-mir-10398/Upstream/3085831; hsa-mir-1202/Downstream/664753;

Nearest TSS

Nearest CpG islands

None/Target, chr6-CpG: 120/Upstream/148734, chr6-CpG: 141/Downstream/320819

Upstream sequence

gtgtatgtgtgggtaatttcactgggtgattctaaaaggtatatggaggttaaaatggccaagagtatcctaaacacccttaaaaaaagaacaaagtagg

Downstream sequence

aaaacatgtgttaccagattttaaaacttattttgtaaaaagaatggtatgagccagggtagaaaaagtggcccactgggtagatgaaagtctaaaaagc