Basic Information
VIS ID
TVIS30003946
Fusion event
HIV-TFB1M integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr6
Cytoband
q25.3
Reference genome
GRCh37/hg19
Start
155630253/155309119 (Hg38)
End
155630253/155309119 (Hg38)
Orient
+
Location type
Intronic
Target gene
TFB1M
miRNAs that regulate target gene
hsa-mir-19b-3p ; hsa-mir-195-5p ; hsa-mir-19a-3p ; hsa-mir-16-5p ; hsa-mir-15b-5p ; hsa-mir-15a-5p
Nearest miRNA
hsa-mir-10398/Upstream/455683; hsa-mir-1202/Downstream/637678;
Nearest TSS
ENST00000381078/Upstream/5621; ENST00000637910/Downstream/5308;
Nearest CpG islands
None/Target, chr6-CpG: 120/Upstream/90060, chr6-CpG: 55/Downstream/4965
Upstream sequence
TAATTTTGTTTCTACTAAAAACAAATGAGAAGTCAAATATACATTTCCTCTAGAGTAATTTAACTTGAAATCAGCCTTCACATTTAGAAAAAAGAGCATA
Downstream sequence
AAACTTTTTCATTATCAATGCTACACAAATATTTACTTTCACTATTTAATGATACATTTAATTAATATGAGAGATACATATACATTTGTGTATATATATA
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
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