Basic Information
VIS ID
TVIS30003948
Fusion event
HIV-ARID1B integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr6
Cytoband
q25.3
Reference genome
GRCh37/hg19
Start
157369048/157047914 (Hg38)
End
157369048/157047914 (Hg38)
Orient
-
Location type
Intronic
Target gene
ARID1B
miRNAs that regulate target gene
hsa-mir-92b-3p ; hsa-mir-324-5p ; hsa-mir-92a-3p ; hsa-mir-25-3p ; hsa-mir-32-5p ; hsa-mir-363-3p ; hsa-mir-367-3p ; hsa-mir-578 ; hsa-mir-643 ; hsa-mir-138-2-3p ; hsa-mir-5692a ; hsa-mir-552-5p ; hsa-mir-302c-5p ; hsa-mir-1185-2-3p ; hsa-mir-1185-1-3p ; hsa-let-7f-2-3p ; hsa-mir-4789-5p ; hsa-mir-98-3p ; hsa-let-7f-1-3p ; hsa-let-7b-3p ; hsa-mir-3143 ; hsa-let-7a-3p ; hsa-mir-656-3p ; hsa-mir-144-3p ; hsa-mir-602 ; hsa-mir-543
Nearest miRNA
hsa-mir-10398/Upstream/268183; hsa-mir-1913/Downstream/481218;
Nearest TSS
ENST00000381078/Upstream/11599; ENST00000493658/Downstream/36852;
Nearest CpG islands
None/Target, chr6-CpG: 120/Upstream/25656, chr6-CpG: 105/Downstream/188123
Upstream sequence
AAAATGCATATATTCTCTTATCCCCACCCTCAAACACCTGTTCATTTGGGACATGCACATGTAATTAGAGGCGTGTTTCAGGACTTGCCTGTAAAATTCC
Downstream sequence
TTTGCATGCAGTTACTGTGATCATATTAGTAATCATCAAGCTACTTGAGATTTTGTTGGGAAGAAGCAAAGAAAATATCCTAGGGAAGATGGGGGTGATT
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
Curate