Basic Information
VIS ID
TVIS30003949
Fusion event
HIV-LOC105378083 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr6
Cytoband
q25.3
Reference genome
GRCh37/hg19
Start
159447311/159026279 (Hg38)
End
159447311/159026279 (Hg38)
Orient
-
Location type
Intronic
Target gene
LOC105378083
Nearest miRNA
hsa-mir-10398/Upstream/261526; hsa-mir-1913/Downstream/7483075;
Nearest TSS
ENST00000381078/Upstream/333; ENST00000643132/Downstream/15519;
Nearest CpG islands
None/Target, chr6-CpG: 120/Upstream/26018, chr6-CpG: 28/Downstream/102771
Nearby gene
TAGAP(No orient, 8190)
Upstream sequence
gccccacttccaacactcagggtcacaatccaacatgagatttgggtggggacacaagagccaaaccacatcaagtagtaagtaaatacggcaaagtata
Downstream sequence
tgaaattaaaaatacaaaaatcaattctgttttcttttttaaattttacaggcagggtcttgctctgtttacctaggctggagtgcagtggcacaattat
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
Curate