Basic Information
VIS ID
TVIS30003951
Fusion event
HIV-chr6 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr6
Cytoband
q27
Reference genome
GRCh37/hg19
Start
166464612/166051124 (Hg38)
End
166464612/166051124 (Hg38)
Orient
+
Location type
Intergenic
Nearest miRNA
hsa-mir-10398/Upstream/7286371; hsa-mir-1913/Downstream/458230;
Nearest TSS
ENST00000381078/Upstream/63076; ENST00000456477/Downstream/48541;
Nearest CpG islands
None/Target, chr6-CpG: 120/Upstream/42371, chr6-CpG: 22/Downstream/107233
Nearby gene
LINC00602(No orient, 61509)
Upstream sequence
gcaattgtgtaatacaatacaatacaatatacaatacttcttatataatacagtacaatagcaaaaccaggaaattggcatgtgtatagttttatttctg
Downstream sequence
tgtcatttttccacatgtgtagattcacataaccaccaccaccacatccaagatacggaacTATgaggccagtctaggcaacatagcaagactcttatct
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
Curate