Basic Information
VIS ID
TVIS30003967
Fusion event
HIV-LOC100505921 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr7
Cytoband
p21.3
Reference genome
GRCh37/hg19
Start
7995581/7955950 (Hg38)
End
7995581/7955950 (Hg38)
Orient
-
Location type
ncRNA_exonic
Target gene
LOC100505921
Nearest miRNA
hsa-mir-339/Upstream/888905; hsa-mir-10399/Downstream/10171270;
Nearest TSS
ENST00000635602/Upstream/5241; ENST00000460897/Downstream/12844;
Nearest CpG islands
None/Target, chr7-CpG: 39/Upstream/314902, chr7-CpG: 81/Downstream/13276
Upstream sequence
TAAAGGGTACCTCTTTTTAAGCAGTTTTCTCCTAATGTAAGTCCAATAGTGCTGAAATTGTCTTCAGACTTACAAGTTTGAGTAGATTTTAGTATGTCAT
Downstream sequence
CTGTATGGATTATGAATTTGTAGGCTTTGGGTCTGAAAGCTGTAATTATCAATGTTTGAAAGACATCTGTGAAGGTGAGGATATGGAGACAATTAGCCAA
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
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