Basic Information
VIS ID
TVIS30003970
Fusion event
HIV-ETV1 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr7
Cytoband
p21.2
Reference genome
GRCh37/hg19
Start
13969323/13929698 (Hg38)
End
13969323/13929698 (Hg38)
Orient
-
Location type
Intronic
Target gene
ETV1
miRNAs that regulate target gene
hsa-mir-335-5p ; hsa-mir-20a-5p ; hsa-mir-17-5p
Nearest miRNA
hsa-mir-339/Upstream/6862653; hsa-mir-10399/Downstream/4197522;
Nearest TSS
ENST00000635602/Upstream/23200; ENST00000412014/Downstream/55791;
Nearest CpG islands
None/Target, chr7-CpG: 39/Upstream/1242075, chr7-CpG: 18/Downstream/60055
Nearest cancer related gene
ETV1(OG, No orient, 0)
Upstream sequence
tcctcatgccttcacgaacaactgccctttagccacccttgaacctagcactatatataggagcaatgtgctctggtttcagaaaacagggcctgggatg
Downstream sequence
cacttactcaggccctggaagtagactcaaggccacttgggcagagaattcataggttttggggagcttgcatgctttctagaagttgaggcatgcctca
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
Curate