Basic Information
VIS ID
TVIS30003975
Fusion event
HIV-TAX1BP1 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr7
Cytoband
p15.2
Reference genome
GRCh37/hg19
Start
27860474/27820855 (Hg38)
End
27860474/27820855 (Hg38)
Orient
+
Location type
Intronic
Target gene
TAX1BP1
miRNAs that regulate target gene
hsa-mir-130b-3p ; hsa-mir-93-5p ; hsa-mir-500a-5p ; hsa-mir-17-5p ; hsa-mir-20a-5p ; hsa-mir-106a-5p ; hsa-mir-143-5p ; hsa-mir-106b-5p ; hsa-mir-20b-5p ; hsa-mir-519c-3p ; hsa-mir-526b-3p ; hsa-mir-519b-3p ; hsa-mir-519d-3p ; hsa-mir-519a-3p ; hsa-mir-545-5p ; hsa-mir-2681-5p ; hsa-mir-4422 ; hsa-mir-6801-5p ; hsa-mir-7844-5p ; hsa-mir-6797-3p ; hsa-mir-6076
Nearest miRNA
hsa-mir-1183/Upstream/651292; hsa-mir-10399/Downstream/1859879;
Nearest TSS
ENST00000635602/Upstream/27717; ENST00000460059/Downstream/6946;
Nearest CpG islands
None/Target, chr7-CpG: 39/Upstream/79873, chr7-CpG: 144/Downstream/358556
Upstream sequence
aaacatacagataaatctttacgacttagattaggcagtagtttcttagatatgacaccaacagcataagcaacaaaggaaaaaatagatataggttgac
Downstream sequence
tatcccttatccaaaatgcttgggaccagaagtatttcagatttcagattttttcagattttggaatatttgcattatacttaacagttgagcacctcta
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
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