Basic Information
VIS ID
TVIS30003978
Fusion event
HIV-ELMO1 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr7
Cytoband
p14.1
Reference genome
GRCh37/hg19
Start
37342671/37303067 (Hg38)
End
37342671/37303067 (Hg38)
Orient
-
Location type
Intronic
Target gene
ELMO1
miRNAs that regulate target gene
hsa-mir-6793-3p ; hsa-mir-4267 ; hsa-mir-6736-3p ; hsa-mir-1226-3p ; hsa-mir-548o-3p ; hsa-mir-1323 ; hsa-mir-3591-3p ; hsa-mir-21-3p ; hsa-mir-27b-3p ; hsa-mir-27a-3p
Nearest miRNA
hsa-mir-1183/Upstream/383635; hsa-mir-10399/Downstream/5847828;
Nearest TSS
ENST00000635602/Upstream/78148; ENST00000467202/Downstream/39696;
Nearest CpG islands
None/Target, chr7-CpG: 39/Upstream/912870, chr7-CpG: 136/Downstream/144684
Upstream sequence
TAAGTTCATCTTCCTCTTATCTCTCCCCAGACTTTCCGCCTAACTTTCTACCTTTCTTCTATTTCTCCTTTTCTTTTTGGTCTTTTTCATGCCTGCCCCC
Downstream sequence
TATGCCTGCCCTTGGGTCACCAGTTTATGCTCATAGTAGATGTTCGttattccattaaacaaatgtttatagagcactgtgctagacactgGGATAACCG
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
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