Basic Information
VIS ID
TVIS30003992
Fusion event
HIV-chr7 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr7
Cytoband
q11.23
Reference genome
GRCh37/hg19
Start
73371032/73956702 (Hg38)
End
73371032/73956702 (Hg38)
Orient
-
Location type
Intergenic
Fragile sites / regions
FRA7J
Nearest miRNA
hsa-mir-1183/Upstream/245305; hsa-mir-10399/Downstream/234496;
Nearest TSS
ENST00000635602/Upstream/95530; ENST00000567919/Downstream/29290;
Nearest CpG islands
None/Target, chr7-CpG: 39/Upstream/100800, chr7-CpG: 96/Downstream/126812
Nearby gene
ELN(No orient, 71087)
Upstream sequence
gcttacgagaaactttgcaatgggacctatccagataatccaggataatttctccacctcaagatccttaatttaggctgggtacagtggctcatgcctg
Downstream sequence
taatcccagcattttgggaggttgaggcgggcggatcttttgagttcggcagtttgagaccagcctggccaacatggtaaaaccccatctctactaaaaa
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
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