Basic Information
VIS ID
TVIS30004000
Fusion event
HIV-LOC105375387 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr7
Cytoband
q21.13
Reference genome
GRCh37/hg19
Start
89079671/89450357 (Hg38)
End
89079671/89450357 (Hg38)
Orient
+
Location type
Intronic
Target gene
LOC105375387
Nearest miRNA
hsa-mir-10525/Upstream/13535088; hsa-mir-10399/Downstream/2753658;
Nearest TSS
ENST00000635602/Upstream/6383; ENST00000475789/Downstream/672533;
Nearest CpG islands
None/Target, chr7-CpG: 39/Upstream/690388, chr7-CpG: 98/Downstream/668221
Nearby gene
ZNF804B(No orient, 113300)
Upstream sequence
tctgtgcagtaaataactgtggcacacgtttacctatgtaataaacgtgcacatcctgcacatgtaccctggaacttaaaagttgatgtgaaaaaagaaa
Downstream sequence
acatacacacacacacccatacacacacacacacacacacacacactcacacacacacTAAGGATTTCCAGAATTAATTCAATGGATAATTAGCTGGTTA
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
Curate