Basic Information
VIS ID
TVIS30004004
Fusion event
HIV-ARPC1A integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr7
Cytoband
q22.1
Reference genome
GRCh37/hg19
Start
98944007/99346384 (Hg38)
End
98944007/99346384 (Hg38)
Orient
+
Location type
Intronic
Fragile sites / regions
FRA7F
Target gene
ARPC1A
miRNAs that regulate target gene
hsa-mir-1274a ; hsa-mir-423-5p ; hsa-let-7i-5p
Nearest miRNA
hsa-mir-10525/Upstream/464655; hsa-mir-10399/Downstream/62788;
Nearest TSS
ENST00000635602/Upstream/20457; ENST00000471960/Downstream/7551;
Nearest CpG islands
None/Target, chr7-CpG: 39/Upstream/20032, chr7-CpG: 145/Downstream/27642
Upstream sequence
CTAACAAAATGTTACCTGCTAGAAACTATTTGGAAGTTTCATTGTAATGAGATAGGAAACTAACTTCATTAATATTCTCTCAAGGCTAAACTTTATGTCA
Downstream sequence
GCTGGTACTCCTTGCAATCTTACAAATTTCTACAGGAAACTTTTCTTCCAAGTTAAGCTTCAACCTCAGTAATTGTTTACATTTTTATTCGTTGAGAATT
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
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