Basic Information
VIS ID
TVIS30004005
Fusion event
HIV-GAL3ST4 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr7
Cytoband
q22.1
Reference genome
GRCh37/hg19
Start
99761624/100164001 (Hg38)
End
99761624/100164001 (Hg38)
Orient
-
Location type
Intronic
Fragile sites / regions
FRA7F
Target gene
GAL3ST4
miRNAs that regulate target gene
hsa-mir-335-5p
Nearest miRNA
hsa-mir-10525/Upstream/7332; hsa-mir-10399/Downstream/192650;
Nearest TSS
ENST00000635602/Upstream/5286; ENST00000482546/Downstream/3229;
Nearest CpG islands
None/Target, chr7-CpG: 39/Upstream/5165, chr7-CpG: 70/Downstream/7260
Upstream sequence
aatcccactctgccatttactaattctgtgactttgggcgggttattgaaggtctcagagccatcattcctccatctagaaatctgagtaactgggtaac
Downstream sequence
acttacctggaagaatGTGCAAGTGTCTGGAACATGGTAGGTATTCAGTGAATGGTGGCGTCAGTGAAGGCCATCATCCTAGCCTCTGGAGAAACCTACC
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
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