Basic Information
VIS ID
TVIS30004006
Fusion event
HIV-GAL3ST4 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr7
Cytoband
q22.1
Reference genome
GRCh37/hg19
Start
99764401/100166778 (Hg38)
End
99764401/100166778 (Hg38)
Orient
-
Location type
Exonic
Fragile sites / regions
FRA7F
Target gene
GAL3ST4
miRNAs that regulate target gene
hsa-mir-335-5p
Nearest miRNA
hsa-mir-10525/Upstream/10109; hsa-mir-10399/Downstream/189873;
Nearest TSS
ENST00000635602/Upstream/8063; ENST00000482546/Downstream/452;
Nearest CpG islands
None/Target, chr7-CpG: 39/Upstream/7942, chr7-CpG: 70/Downstream/4483
Upstream sequence
GCTCAGCACAGAGCTGCTCCCGGATTTATGTGTCTTCAGGAACACCAGTCGCTGCCGGGGTGGGCAGGACGGAAGGGCTGGTCGTAGGGATGGGGCCGAG
Downstream sequence
GGCTGTCGGAGCTGTAGCCCAGGTAGCCTGGGAAGAGATGGAGGGGGAGTGTCCTGTTCCTCAGCAGCAAATGGGTAGAAGGGACAGAGGGCATGGAGGC
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
Curate