Basic Information
VIS ID
TVIS30004008
Fusion event
HIV-chr7 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr7
Cytoband
q22.1
Reference genome
GRCh37/hg19
Start
99960362/100362739 (Hg38)
End
99960362/100362739 (Hg38)
Orient
-
Location type
ncRNA_intronic
Fragile sites / regions
FRA7F
Nearest miRNA
hsa-mir-10525/Upstream/6018; hsa-mir-10399/Downstream/505297;
Nearest TSS
ENST00000635602/Upstream/4724; ENST00000484934/Downstream/4791;
Nearest CpG islands
None/Target, chr7-CpG: 39/Upstream/26275, chr7-CpG: 199/Downstream/65442
Nearby gene
PVRIG2P(-6018) ; PILRA(+9920) ;
Upstream sequence
ctaggattacaggtgtgcaccactatgcccggctaatttttgtatttttggaagaaacgtggttttactatattggccaggctggtctcgaactcccgac
Downstream sequence
ctcaagtgatccgcccaccttggcctcccaaagtgctggcattgcaggctgagccacggtgcccagcctgaacaccctttcctggtaaaacactccaaaa
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
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